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The last 5 uploaded publications
Single-cell phylodynamics reveal rapid late-stage colorectal cancer expansions
João M. Alves, Kylie Chen, Sonia Prado‐Lòpez, Nuria Estévez‐Gómez, Pilar Alvariño, Juana Alonso, Monica Valecha, Laura Tomás‐Gallardo, Antoine Zwaans, Ugnė Stolz, Tanja Stadler, Débora Chantada, José Cameselle‐Teijeiro, Alexei J. Drummond, David Posada (2025). Single-cell phylodynamics reveal rapid late-stage colorectal cancer expansions. , DOI: https://doi.org/10.1101/2025.11.25.690378.
Preprint13 days agoDelSIEVE: cell phylogeny modeling of single nucleotide variants and deletions from single-cell DNA sequencing data
Senbai Kang, Nico Borgsmüller, Monica Valecha, Magda Markowska, Jack Kuipers, Niko Beerenwinkel, David Posada, Ewa Szczurek (2025). DelSIEVE: cell phylogeny modeling of single nucleotide variants and deletions from single-cell DNA sequencing data. , 26(1), DOI: https://doi.org/10.1186/s13059-025-03738-9.
Article13 days agoDelSIEVE: cell phylogeny model of single nucleotide variants and deletions from single-cell DNA sequencing data
Senbai Kang, Nico Borgsmüller, Monica Valecha, Magda Markowska, Jack Kuipers, Niko Beerenwinkel, David Posada, Ewa Szczurek (2023). DelSIEVE: cell phylogeny model of single nucleotide variants and deletions from single-cell DNA sequencing data. , DOI: https://doi.org/10.1101/2023.09.09.556903.
Preprint13 days agoSingle-cell phylogenies reveal changes in the evolutionary rate within cancer and healthy tissues
Nico Borgsmüller, Monica Valecha, Jack Kuipers, Niko Beerenwinkel, David Posada (2023). Single-cell phylogenies reveal changes in the evolutionary rate within cancer and healthy tissues. , 3(9), DOI: https://doi.org/10.1016/j.xgen.2023.100380.
Article13 days agoSIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data
Senbai Kang, Nico Borgsmüller, Monica Valecha, Jack Kuipers, João M. Alves, Sonia Prado‐Lòpez, Débora Chantada, Niko Beerenwinkel, David Posada, Ewa Szczurek (2022). SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data. , 23(1), DOI: https://doi.org/10.1186/s13059-022-02813-9.
Article13 days ago