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The last 5 uploaded publications
CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units
Yongchao Liu, Douglas Leslie Maskell, Bertil Schmidt (2009). CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units. BMC Research Notes, 2(1), pp. 73-73, DOI: 10.1186/1756-0500-2-73.
Article289 days agoMSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities
Yongchao Liu, Bertil Schmidt, Douglas Leslie Maskell (2010). MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities. Bioinformatics, 26(16), pp. 1958-1964, DOI: 10.1093/bioinformatics/btq338.
Article289 days agoCUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions
Yongchao Liu, Bertil Schmidt, Douglas Leslie Maskell (2010). CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions. BMC Research Notes, 3(1), DOI: 10.1186/1756-0500-3-93.
Article289 days agoCUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform
Yongchao Liu, Bertil Schmidt, Douglas Leslie Maskell (2012). CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform. Bioinformatics, 28(14), pp. 1830-1837, DOI: 10.1093/bioinformatics/bts276.
Article289 days agoUsing reconfigurable hardware to accelerate multiple sequence alignment with ClustalW
Tim Oliver, Bertil Schmidt, Darran Nathan, Ralf Clemens, Douglas Leslie Maskell (2005). Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW. Bioinformatics, 21(16), pp. 3431-3432, DOI: 10.1093/bioinformatics/bti508.
Article289 days ago