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The last 5 uploaded publications
The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
William Morrell, Garrett W. Birkel, Mark Forrer, Teresa Díaz-Faes López, Tyler W. H. Backman, Michael Dussault, Christopher J. Petzold, Edward E. K. Baidoo, Zak Costello, David Ando, Jorge Alonso-Gutiérrez, Kevin W. George, Aindrila Mukhopadhyay, Ian Vaino, Jay D Keasling, Paul D. Adams, Nathan J. Hillson, Héctor García Martín (2017). The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization. , 6(12), DOI: https://doi.org/10.1021/acssynbio.7b00204.
Article140 days agoThe JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism
Garrett W. Birkel, Amit Ghosh, Vinay Kumar, Daniel Weaver, David Ando, Tyler W. H. Backman, Adam P. Arkin, Jay D Keasling, Héctor García Martín (2017). The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism. , 18(1), DOI: https://doi.org/10.1186/s12859-017-1615-y.
Article140 days agoMachine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida
Apostolos Zournas, Matthew R. Incha, Tijana Radivojević, Vincent Blay, Jose Manuel Martí, Zak Costello, Matthias Schmidt, Tan Chung, Mitchell G. Thompson, Allison S. Pearson, Patrick C. Kinnunen, Thomas Eng, Christopher E. Lawson, Paul D. Adams, Tadeusz L. Ogorzalek, Nurgul Kaplan, Mark Forrer, Tyler W. H. Backman, Aindrila Mukhopadhyay, Nathan J. Hillson, Jay D Keasling, Héctor García Martín (2025). Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida. , 8(1), DOI: https://doi.org/10.1038/s42003-025-08039-2.
Article140 days agoAuthor Correction: Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida
Apostolos Zournas, Matthew R. Incha, Tijana Radivojević, Vincent Blay, Jose Manuel Martí, Zak Costello, Matthias Schmidt, Tan Chung, Mitchell G. Thompson, Allison S. Pearson, Patrick C. Kinnunen, Thomas Eng, Christopher E. Lawson, Paul D. Adams, Tadeusz L. Ogorzalek, Nurgul Kaplan, Mark Forrer, Tyler W. H. Backman, Aindrila Mukhopadhyay, Nathan J. Hillson, Jay D Keasling, Héctor García Martín (2025). Author Correction: Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida. , 8 (1), DOI: https://doi.org/10.1038/s42003-025-08141-5.
Corrigendum140 days agoMerging the computational design of chimeric type I polyketide synthases with enzymatic pathways for chemical biosynthesis
Yash Chainani, Juan Antonio Díaz‐Pendón, Margaret Guilarte-Silva, Vincent Blay, Quan Zhang, William W Sprague, Keith E. J. Tyo, Linda J. Broadbelt, Aindrila Mukhopadhyay, Jay D Keasling, Héctor García Martín, Tyler W. H. Backman (2025). Merging the computational design of chimeric type I polyketide synthases with enzymatic pathways for chemical biosynthesis. , 16(1), DOI: https://doi.org/10.1038/s41467-025-61160-y.
Article140 days ago