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The last 5 uploaded publications
Maximizing microbial bioproduction from sustainable carbon sources using iterative systems engineering
Thomas Eng, Deepanwita Banerjee, Javier Menasalvas, Yan Chen, Jennifer Gin, Hemant Choudhary, Edward E. K. Baidoo, Jian-Hua Chen, Axel Ekman, Ramu Kakumanu, Yuzhong Liu, Alex Codik, Carolyn A. Larabell, John M. Gladden, Blake A. Simmons, Jay D Keasling, Christopher J. Petzold, Aindrila Mukhopadhyay (2023). Maximizing microbial bioproduction from sustainable carbon sources using iterative systems engineering. , 42(9), DOI: https://doi.org/10.1016/j.celrep.2023.113087.
Article121 days agoMachine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida
Apostolos Zournas, Matthew R. Incha, Tijana Radivojević, Vincent Blay, Jose Manuel Martí, Zak Costello, Matthias Schmidt, Tan Chung, Mitchell G. Thompson, Allison S. Pearson, Patrick C. Kinnunen, Thomas Eng, Christopher E. Lawson, Paul D. Adams, Tadeusz L. Ogorzalek, Nurgul Kaplan, Mark Forrer, Tyler W. H. Backman, Aindrila Mukhopadhyay, Nathan J. Hillson, Jay D Keasling, Héctor García Martín (2025). Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida. , 8(1), DOI: https://doi.org/10.1038/s42003-025-08039-2.
Article121 days agoAuthor Correction: Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida
Apostolos Zournas, Matthew R. Incha, Tijana Radivojević, Vincent Blay, Jose Manuel Martí, Zak Costello, Matthias Schmidt, Tan Chung, Mitchell G. Thompson, Allison S. Pearson, Patrick C. Kinnunen, Thomas Eng, Christopher E. Lawson, Paul D. Adams, Tadeusz L. Ogorzalek, Nurgul Kaplan, Mark Forrer, Tyler W. H. Backman, Aindrila Mukhopadhyay, Nathan J. Hillson, Jay D Keasling, Héctor García Martín (2025). Author Correction: Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida. , 8 (1), DOI: https://doi.org/10.1038/s42003-025-08141-5.
Corrigendum121 days agoMachine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida
Apostolos Zournas, Matthew R. Incha, Tijana Radivojević, Vincent Blay, José Martí, Zak Costello, Matthias Schmidt, Tan Chung, Mitchell G. Thompson, Allie Pearson, Patrick C. Kinnunen, Thomas Eng, Christopher E. Lawson, Paul D. Adams, Tadeusz L. Ogorzalek, Nurgul Kaplan, Mark Forrer, Tyler W. H. Backman, Aindrila Mukhopadhyay, Nathan J. Hillson, Jay D Keasling, Héctor García Martín (2024). Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida. , DOI: https://doi.org/10.21203/rs.3.rs-5072705/v1.
Preprint121 days agoEnsemble and Iterative Engineering for Maximized Bioconversion to the Blue Pigment, Indigoidine from Non-Canonical Sustainable Carbon Sources
Thomas Eng, Deepanwita Banerjee, Javier Menasalvas, Yan Chen, Jennifer Gin, Hemant Choudhary, Edward E. K. Baidoo, Jian-Hua Chen, Axel Ekman, Ramu Kakumanu, Yuzhong Liu, Alex Codik, Carolyn A. Larabell, John M. Gladden, Blake A. Simmons, Jay D Keasling, Christopher J. Petzold, Aindrila Mukhopadhyay (2023). Ensemble and Iterative Engineering for Maximized Bioconversion to the Blue Pigment, Indigoidine from Non-Canonical Sustainable Carbon Sources. , DOI: https://doi.org/10.1101/2023.03.16.532821.
Preprint121 days ago