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The last 5 uploaded publications
Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida
Apostolos Zournas, Matthew R. Incha, Tijana Radivojević, Vincent Blay, Jose Manuel Martí, Zak Costello, Matthias Schmidt, Tan Chung, Mitchell G. Thompson, Allison S. Pearson, Patrick C. Kinnunen, Thomas Eng, Christopher E. Lawson, Paul D. Adams, Tadeusz L. Ogorzalek, Nurgul Kaplan, Mark Forrer, Tyler W. H. Backman, Aindrila Mukhopadhyay, Nathan J. Hillson, Jay D Keasling, Héctor García Martín (2025). Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida. , 8(1), DOI: https://doi.org/10.1038/s42003-025-08039-2.
Article23 days agoAuthor Correction: Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida
Apostolos Zournas, Matthew R. Incha, Tijana Radivojević, Vincent Blay, Jose Manuel Martí, Zak Costello, Matthias Schmidt, Tan Chung, Mitchell G. Thompson, Allison S. Pearson, Patrick C. Kinnunen, Thomas Eng, Christopher E. Lawson, Paul D. Adams, Tadeusz L. Ogorzalek, Nurgul Kaplan, Mark Forrer, Tyler W. H. Backman, Aindrila Mukhopadhyay, Nathan J. Hillson, Jay D Keasling, Héctor García Martín (2025). Author Correction: Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida. , 8 (1), DOI: https://doi.org/10.1038/s42003-025-08141-5.
Corrigendum23 days agoPredictive engineering and optimization of tryptophan metabolism in yeast through a combination of mechanistic and machine learning models
Jie Zhang, Søren D. Petersen, Tijana Radivojević, Andrés Ramirez, Andrés M. Perez, Eduardo Abeliuk, Benjamín J. Sánchez, Zachary Costello, Yu Chen, Mike Fero, Héctor García Martín, Jens Nielsen, Jay D Keasling, Michael K. Jensen (2019). Predictive engineering and optimization of tryptophan metabolism in yeast through a combination of mechanistic and machine learning models. , DOI: https://doi.org/10.1101/858464.
Preprint23 days agoMachine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida
Apostolos Zournas, Matthew R. Incha, Tijana Radivojević, Vincent Blay, José Martí, Zak Costello, Matthias Schmidt, Tan Chung, Mitchell G. Thompson, Allie Pearson, Patrick C. Kinnunen, Thomas Eng, Christopher E. Lawson, Paul D. Adams, Tadeusz L. Ogorzalek, Nurgul Kaplan, Mark Forrer, Tyler W. H. Backman, Aindrila Mukhopadhyay, Nathan J. Hillson, Jay D Keasling, Héctor García Martín (2024). Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida. , DOI: https://doi.org/10.21203/rs.3.rs-5072705/v1.
Preprint23 days agoBayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale
Tyler W. H. Backman, Christina Schenk, Tijana Radivojević, David Ando, Jahnavi Singh, Jeffrey J. Czajka, Zak Costello, Jay D Keasling, Yinjie Tang, Elena Akhmatskaya, Héctor García Martín (2023). BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale. , 19(11), DOI: https://doi.org/10.1371/journal.pcbi.1011111.
Article23 days ago