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DelSIEVE: cell phylogeny modeling of single nucleotide variants and deletions from single-cell DNA sequencing data
Senbai Kang, Nico Borgsmüller, Monica Valecha, Magda Markowska, Jack Kuipers, Niko Beerenwinkel, David Posada, Ewa Szczurek (2025). DelSIEVE: cell phylogeny modeling of single nucleotide variants and deletions from single-cell DNA sequencing data. , 26(1), DOI: https://doi.org/10.1186/s13059-025-03738-9.
Article13 days agoDelSIEVE: cell phylogeny model of single nucleotide variants and deletions from single-cell DNA sequencing data
Senbai Kang, Nico Borgsmüller, Monica Valecha, Magda Markowska, Jack Kuipers, Niko Beerenwinkel, David Posada, Ewa Szczurek (2023). DelSIEVE: cell phylogeny model of single nucleotide variants and deletions from single-cell DNA sequencing data. , DOI: https://doi.org/10.1101/2023.09.09.556903.
Preprint13 days agoSingle-cell phylogenies reveal changes in the evolutionary rate within cancer and healthy tissues
Nico Borgsmüller, Monica Valecha, Jack Kuipers, Niko Beerenwinkel, David Posada (2023). Single-cell phylogenies reveal changes in the evolutionary rate within cancer and healthy tissues. , 3(9), DOI: https://doi.org/10.1016/j.xgen.2023.100380.
Article13 days agoSIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data
Senbai Kang, Nico Borgsmüller, Monica Valecha, Jack Kuipers, João M. Alves, Sonia Prado‐Lòpez, Débora Chantada, Niko Beerenwinkel, David Posada, Ewa Szczurek (2022). SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data. , 23(1), DOI: https://doi.org/10.1186/s13059-022-02813-9.
Article13 days agoSingle-cell phylogenies reveal deviations from clock-like, neutral evolution in cancer and healthy tissues
Nico Borgsmüller, Monica Valecha, Jack Kuipers, Niko Beerenwinkel, David Posada (2022). Single-cell phylogenies reveal deviations from clock-like, neutral evolution in cancer and healthy tissues. , DOI: https://doi.org/10.1101/2022.08.09.503287.
Preprint13 days ago