Computing Cliques and Cavities in Networks

Complex networks have complete subgraphs such as nodes, edges, triangles, etc., referred to as cliques of different orders. Notably, cavities consisting of higher-order cliques have been found playing an important role in brain functions. Since searching for the maximum clique in a large network is an NP-complete problem, we propose using k-core decomposition to determine the computability of a given network subject to limited computing resources. For a computable network, we design a search algorithm for finding cliques of different orders, which also provides the Euler characteristic number. Then, we compute the Betti number by using the ranks of the boundary matrices of adjacent cliques. Furthermore, we design an optimized algorithm for finding cavities of different orders. Finally, we apply the algorithm to the neuronal network of C. elegans in one dataset, and find all of its cliques and some cavities of different orders therein, providing a basis for further mathematical analysis and computation of the structure and function of the C. elegans neuronal network.